PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018476-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 487aa    MW: 54495.4 Da    PI: 8.1275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018476-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12310355454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av YI++L
  WALNUT_00018476-RA 310 NHVEAERQRREKLNHRFYALRSAVPNV-----SKMDKASLLADAVVYINEL 355
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4021206IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.72E-17303370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.774306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.50E-13309360No hitNo description
PfamPF000108.8E-10310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16310368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-15312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSSPSSSLV SASHEAASTT LQQRLQFLLQ SRPEYWWVYS IFWQTTKDSN GCVALSWGDG  60
HFRGTARDFV SKSSNKGDVD PHIYGFSFEK KKTSKVVQAL FAEDMDLDGE MEAHAAQLYY  120
FYALSEARSF AVRDGVLDRA YSCGAYIWLT GDHDLQFYEC ERVKEARMRG IQTLLCVATS  180
RGVIELGSSD VIKEDWSLVQ LVKSLFDAEN TSSQVLKQAS QSGQMAITAK RDLPFLDIGM  240
CSQPQKEYST LQGRQTEVDA IKEGAGLFRS SSDSGRSDSD GNFPSENIEN VRLKKRGRKP  300
ASTGRESPLN HVEAERQRRE KLNHRFYALR SAVPNVSKMD KASLLADAVV YINELKAKIK  360
TLEAKLKAQS PRANINSGMS TYMYENQSRA TNIVHPTRTS SGFTTNTMEV EVKIVGSEAL  420
IRVQCPDVDY PHARLMNALR DLQLQIHHAS ISSVKELMLQ DVVVKFPDGS ESTGEAMRRA  480
ILERMRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-22202078193Transcription factor MYC3
4rs9_A3e-22202078193Transcription factor MYC3
4rqw_B3e-22202078193Transcription factor MYC3
4rqw_A3e-22202078193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007039384.11e-173Basic helix-loop-helix DNA-binding family protein, putative
TrEMBLA0A061G2061e-173A0A061G206_THECC; Basic helix-loop-helix DNA-binding family protein, putative
STRINGPOPTR_0001s11400.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-54bHLH family protein